I bet it will. both companys make slipons to fit the stock header, so to make their header work with their slip on it must be in the same place as the stock header......if you follow.....lol.
You should be fine. I do know that guys are doing it all the time in the predator world.
The only way it wouldnt work is if the state that you have to buy the full exhaust, thus telling you that their headers are different.
This is meirly a edjumacated guesss though, only way to tell is to try it.