I don't remember black with red frame on a 660. That didn't happen til last year with the 700 se. Correct me if I am wrong. I do remember white with red frame, though.
2005 UK 660 had the same red frame as the US white/red model but had all black plastic.
2005 Raptor 660 in the US
2005 YFM660R in the UK and many other countries
LTE makes good inframe dual exhausts, and while they aren't tested by many US riders I'm pretty sure Wileyco makes a decently priced set of duals as well.
What kind of engine you build is going to depend a lot on what you're doing with it. Wide open dune machines need a strong midrange with a heavy helping of top end power, while trail machines benefit most from low end grunt and midrange power.
If you're really thinking of a complete build I'd call up Tim or CoalShed or Bob or Ken or one of the other builders.